PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25971-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 244aa    MW: 26826.4 Da    PI: 5.6037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25971-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-141564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv+ +++ Gg+  +W+  ++  g++R++k+c++rw +yl
  TRIUR3_25971-P1 15 KGPWTEEEDKTLVEHIQKRGGHvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-20767IPR009057Homeodomain-like
PROSITE profilePS5129421.7671068IPR017930Myb domain
SMARTSM007171.0E-81466IPR001005SANT/Myb domain
PfamPF002492.2E-131564IPR001005SANT/Myb domain
SuperFamilySSF466894.18E-191693IPR009057Homeodomain-like
CDDcd001674.63E-81764No hitNo description
PROSITE profilePS500903.93865116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-86898IPR009057Homeodomain-like
SMARTSM007175169145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRSPCCCHD VGVKKGPWTE EEDKTLVEHI QKRGGHVGSW RGLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFSDDEERL IITLHAGHGN KQAQLLQHLL QAGSNNDATN LVANLMAASN  120
VGLNSSNSIV PNILLQDKFN MLPGTNYLQP GYLCNTSNFA EQDVVQQQLI NAMSPGTSSF  180
AVAEPADQLC NTAAFTARDI APGIDMLPVQ EFAGLMEPME QLPNLCSLES DSFWKELLED  240
GYRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-151511627124MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700901e-84AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds.
GenBankAM1569041e-84AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0344841e-84BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds.
GenBankBT0543981e-84BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586911e-84HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635814.15e-58PREDICTED: transcription factor MYB34
TrEMBLM7YNZ20.0M7YNZ2_TRIUA; Transcription factor MYB39
STRINGMLOC_12474.12e-77(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-42myb domain protein 9